IL_6N1D_191
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGGCCAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N1D_191 not in the Motif Atlas
- Homologous match to IL_4LFB_020
- Geometric discrepancy: 0.1779
- The information below is about IL_4LFB_020
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
6N1D|1|B16S|C|504
6N1D|1|B16S|G|505
6N1D|1|B16S|G|506
6N1D|1|B16S|C|507
6N1D|1|B16S|C|508
6N1D|1|B16S|A|509
6N1D|1|B16S|A|510
6N1D|1|B16S|C|511
*
6N1D|1|B16S|G|540
6N1D|1|B16S|G|541
Current chains
- Chain B16S
- 16S rRNA
Nearby chains
- Chain BS04
- 30S ribosomal protein S4
- Chain BS05
- 30S ribosomal protein S5
- Chain BS12
- 30S ribosomal protein S12
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