IL_6N1D_204

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_204 not in the Motif Atlas

Homologous match to IL_6CZR_145

Geometric discrepancy: 0.1316

The information below is about IL_6CZR_145

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6N1D|1|B16S|C|779
6N1D|1|B16S|A|780
6N1D|1|B16S|A|781
6N1D|1|B16S|A|782
6N1D|1|B16S|C|783
*
6N1D|1|B16S|G|799
6N1D|1|B16S|G|800
6N1D|1|B16S|U|801
6N1D|1|B16S|A|802
6N1D|1|B16S|G|803

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain B23S

Large subunit ribosomal RNA; LSU rRNA

Chain BS11

30S ribosomal protein S11