IL_6N1D_209

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

6N1D|1|B16S|A|1227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_209 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.482

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

6N1D|1|B16S|G|953
6N1D|1|B16S|G|954
*
6N1D|1|B16S|C|1226
6N1D|1|B16S|A|1227
6N1D|1|B16S|C|1228

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain BATN

Transfer RNA; tRNA

Chain BPTN

Transfer RNA; tRNA

Chain BS13

30S ribosomal protein S13

Chain BS19

30S ribosomal protein S19