IL_6N1D_210

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_210 not in the Motif Atlas

Geometric match to IL_6CZR_151

Geometric discrepancy: 0.3185

The information below is about IL_6CZR_151

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.2

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

6N1D|1|B16S|G|993
6N1D|1|B16S|A|994
6N1D|1|B16S|C|995
6N1D|1|B16S|A|996
6N1D|1|B16S|U|997
*
6N1D|1|B16S|A|1044
6N1D|1|B16S|C|1045

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain BS03

30S ribosomal protein S3

Chain BS14

30S ribosomal protein S14 type Z