IL_6N1D_212

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGCAU*AUGG

Length

10 nucleotides

Bulged bases

6N1D|1|B16S|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_212 not in the Motif Atlas

Geometric match to IL_4V88_473

Geometric discrepancy: 0.3001

The information below is about IL_4V88_473

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6N1D|1|B16S|C|1051
6N1D|1|B16S|U|1052
6N1D|1|B16S|G|1053
6N1D|1|B16S|C|1054
6N1D|1|B16S|A|1055
6N1D|1|B16S|U|1056
*
6N1D|1|B16S|A|1204
6N1D|1|B16S|U|1205
6N1D|1|B16S|G|1206
6N1D|1|B16S|G|1207

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain BS03

30S ribosomal protein S3

Chain BS10

30S ribosomal protein S10

Chain BS14

30S ribosomal protein S14 type Z