IL_6N1D_213

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

6N1D|1|B16S|C|1200, 6N1D|1|B16S|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_213 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.2309

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

6N1D|1|B16S|G|1057
6N1D|1|B16S|G|1058
*
6N1D|1|B16S|U|1199
6N1D|1|B16S|C|1200
6N1D|1|B16S|A|1201
6N1D|1|B16S|G|1202
6N1D|1|B16S|C|1203

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain BS03

30S ribosomal protein S3

Chain BS10

30S ribosomal protein S10

Chain BS14

30S ribosomal protein S14 type Z