IL_6N1D_214
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CG*CUG
- Length
- 5 nucleotides
- Bulged bases
- 6N1D|1|B16S|U|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N1D_214 not in the Motif Atlas
- Geometric match to IL_4V88_469
- Geometric discrepancy: 0.3904
- The information below is about IL_4V88_469
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
6N1D|1|B16S|C|1060
6N1D|1|B16S|G|1061
*
6N1D|1|B16S|C|1195
6N1D|1|B16S|U|1196
6N1D|1|B16S|G|1197
Current chains
- Chain B16S
- 16S rRNA
Nearby chains
- Chain BATN
- Transfer RNA; tRNA
- Chain BS03
- 30S ribosomal protein S3
- Chain BS05
- 30S ribosomal protein S5
- Chain BS09
- 30S ribosomal protein S9
- Chain BS10
- 30S ribosomal protein S10
- Chain BS14
- 30S ribosomal protein S14 type Z
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