IL_6N1D_222

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_222 not in the Motif Atlas

Geometric match to IL_4V88_471

Geometric discrepancy: 0.3065

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6N1D|1|B16S|C|1259
6N1D|1|B16S|C|1260
6N1D|1|B16S|A|1261
6N1D|1|B16S|C|1262
*
6N1D|1|B16S|G|1273
6N1D|1|B16S|G|1274
6N1D|1|B16S|A|1275
6N1D|1|B16S|G|1276

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain BTHX

30S ribosomal protein Thx