IL_6N1D_225

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_225 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1787

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6N1D|1|B16S|G|1401
6N1D|1|B16S|C|1402
6N1D|1|B16S|C|1403
6N1D|1|B16S|C|1404
*
6N1D|1|B16S|G|1497
6N1D|1|B16S|U|1498
6N1D|1|B16S|A|1499
6N1D|1|B16S|A|1500
6N1D|1|B16S|C|1501

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain B23S

Large subunit ribosomal RNA; LSU rRNA

Chain BATN

Transfer RNA; tRNA

Chain BMRN

mRNA

Chain BS12

30S ribosomal protein S12