IL_6N1D_229

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_229 not in the Motif Atlas

Homologous match to IL_6CZR_169

Geometric discrepancy: 0.1102

The information below is about IL_6CZR_169

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

6N1D|1|B16S|G|1416
6N1D|1|B16S|G|1417
6N1D|1|B16S|A|1418
6N1D|1|B16S|G|1419
*
6N1D|1|B16S|U|1481
6N1D|1|B16S|G|1482
6N1D|1|B16S|A|1483
6N1D|1|B16S|C|1484

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain B23S

Large subunit ribosomal RNA; LSU rRNA

Chain BS12

30S ribosomal protein S12