3D structure

PDB id
6N1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GAAAC*GAGAUAGC
Length
13 nucleotides
Bulged bases
6N1D|1|B23S|G|801, 6N1D|1|B23S|G|805
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N1D_249 not in the Motif Atlas
Homologous match to IL_7A0S_015
Geometric discrepancy: 0.1569
The information below is about IL_7A0S_015
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_54041.2
Basepair signature
cWW-L-R-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

6N1D|1|B23S|G|674
6N1D|1|B23S|A|675
6N1D|1|B23S|A|676
6N1D|1|B23S|A|677
6N1D|1|B23S|C|678
*
6N1D|1|B23S|G|799
6N1D|1|B23S|A|800
6N1D|1|B23S|G|801
6N1D|1|B23S|A|802
6N1D|1|B23S|U|803
6N1D|1|B23S|A|804
6N1D|1|B23S|G|805
6N1D|1|B23S|C|806

Current chains

Chain B23S
23S rRNA

Nearby chains

Chain BL04
50S ribosomal protein L4
Chain BL15
50S ribosomal protein L15

Coloring options:


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