IL_6N1D_259

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_259 not in the Motif Atlas

Homologous match to IL_7RQB_028

Geometric discrepancy: 0.1077

The information below is about IL_7RQB_028

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

6N1D|1|B23S|G|862
6N1D|1|B23S|A|863
*
6N1D|1|B23S|U|913
6N1D|1|B23S|C|914
6N1D|1|B23S|C|915

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain B5S

5S ribosomal RNA; 5S rRNA

Chain BL16

50S ribosomal protein L16

Chain BL27

50S ribosomal protein L27