IL_6N1D_265

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

6N1D|1|B23S|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_265 not in the Motif Atlas

Homologous match to IL_7RQB_035

Geometric discrepancy: 0.1747

The information below is about IL_7RQB_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

6N1D|1|B23S|C|994
6N1D|1|B23S|C|995
6N1D|1|B23S|A|996
*
6N1D|1|B23S|U|1159
6N1D|1|B23S|G|1160

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL13

50S ribosomal protein L13

Chain BL20

50S ribosomal protein L20

Chain BL21

50S ribosomal protein L21

Chain BL30

50S ribosomal protein L30