IL_6N1D_266
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 6N1D|1|B23S|A|1156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N1D_266 not in the Motif Atlas
- Homologous match to IL_7A0S_033
- Geometric discrepancy: 0.1617
- The information below is about IL_7A0S_033
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_38507.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
6N1D|1|B23S|C|998
6N1D|1|B23S|U|999
6N1D|1|B23S|A|1000
6N1D|1|B23S|A|1001
6N1D|1|B23S|G|1002
*
6N1D|1|B23S|C|1153
6N1D|1|B23S|G|1154
6N1D|1|B23S|A|1155
6N1D|1|B23S|A|1156
6N1D|1|B23S|G|1157
Current chains
- Chain B23S
- 23S rRNA
Nearby chains
- Chain B5S
- 5S ribosomal RNA; 5S rRNA
- Chain BL20
- 50S ribosomal protein L20
- Chain BL21
- 50S ribosomal protein L21
- Chain BL30
- 50S ribosomal protein L30
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