IL_6N1D_266

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

6N1D|1|B23S|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_266 not in the Motif Atlas

Homologous match to IL_7A0S_033

Geometric discrepancy: 0.1617

The information below is about IL_7A0S_033

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6N1D|1|B23S|C|998
6N1D|1|B23S|U|999
6N1D|1|B23S|A|1000
6N1D|1|B23S|A|1001
6N1D|1|B23S|G|1002
*
6N1D|1|B23S|C|1153
6N1D|1|B23S|G|1154
6N1D|1|B23S|A|1155
6N1D|1|B23S|A|1156
6N1D|1|B23S|G|1157

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain B5S

5S ribosomal RNA; 5S rRNA

Chain BL20

50S ribosomal protein L20

Chain BL21

50S ribosomal protein L21

Chain BL30

50S ribosomal protein L30