3D structure

PDB id
6N1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUAAG*CGAAG
Length
10 nucleotides
Bulged bases
6N1D|1|B23S|A|1156
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N1D_266 not in the Motif Atlas
Homologous match to IL_7A0S_033
Geometric discrepancy: 0.1617
The information below is about IL_7A0S_033
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_38507.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
16

Unit IDs

6N1D|1|B23S|C|998
6N1D|1|B23S|U|999
6N1D|1|B23S|A|1000
6N1D|1|B23S|A|1001
6N1D|1|B23S|G|1002
*
6N1D|1|B23S|C|1153
6N1D|1|B23S|G|1154
6N1D|1|B23S|A|1155
6N1D|1|B23S|A|1156
6N1D|1|B23S|G|1157

Current chains

Chain B23S
23S rRNA

Nearby chains

Chain B5S
5S ribosomal RNA; 5S rRNA
Chain BL20
50S ribosomal protein L20
Chain BL21
50S ribosomal protein L21
Chain BL30
50S ribosomal protein L30

Coloring options:


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