IL_6N1D_277

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6N1D|1|B23S|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_277 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1854

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6N1D|1|B23S|C|1208
6N1D|1|B23S|G|1209
6N1D|1|B23S|A|1210
6N1D|1|B23S|U|1211
6N1D|1|B23S|G|1212
6N1D|1|B23S|A|1213
6N1D|1|B23S|A|1214
6N1D|1|B23S|G|1215
*
6N1D|1|B23S|U|1234
6N1D|1|B23S|G|1235
6N1D|1|B23S|G|1236
6N1D|1|B23S|A|1237
6N1D|1|B23S|G|1238

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL20

50S ribosomal protein L20