3D structure

PDB id
6N1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GCAAU*AGC
Length
8 nucleotides
Bulged bases
6N1D|1|B23S|G|1332
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N1D_281 not in the Motif Atlas
Homologous match to IL_4WF9_050
Geometric discrepancy: 0.1385
The information below is about IL_4WF9_050
Detailed Annotation
Major groove minor groove platform with tHH
Broad Annotation
No text annotation
Motif group
IL_83150.2
Basepair signature
cWW-tHH-cWW-L-L
Number of instances in this motif group
4

Unit IDs

6N1D|1|B23S|G|1319
6N1D|1|B23S|C|1320
6N1D|1|B23S|A|1321
6N1D|1|B23S|A|1322
6N1D|1|B23S|U|1323
*
6N1D|1|B23S|A|1331
6N1D|1|B23S|G|1332
6N1D|1|B23S|C|1333

Current chains

Chain B23S
23S rRNA

Nearby chains

Chain BL22
50S ribosomal protein L22
Chain BL23
50S ribosomal protein L23

Coloring options:


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