IL_6N1D_281

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

6N1D|1|B23S|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_281 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.1385

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

6N1D|1|B23S|G|1319
6N1D|1|B23S|C|1320
6N1D|1|B23S|A|1321
6N1D|1|B23S|A|1322
6N1D|1|B23S|U|1323
*
6N1D|1|B23S|A|1331
6N1D|1|B23S|G|1332
6N1D|1|B23S|C|1333

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL22

50S ribosomal protein L22

Chain BL23

50S ribosomal protein L23