IL_6N1D_282

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

6N1D|1|B23S|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_282 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.1529

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6N1D|1|B23S|C|1351
6N1D|1|B23S|U|1352
6N1D|1|B23S|A|1353
6N1D|1|B23S|A|1354
6N1D|1|B23S|G|1355
*
6N1D|1|B23S|C|1376
6N1D|1|B23S|G|1377
6N1D|1|B23S|A|1378
6N1D|1|B23S|A|1379
6N1D|1|B23S|G|1380

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL02

50S ribosomal protein L2

Chain BL34

50S ribosomal protein L34