3D structure

PDB id
6N1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UGAAG*CGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N1D_283 not in the Motif Atlas
Homologous match to IL_4WF9_052
Geometric discrepancy: 0.2421
The information below is about IL_4WF9_052
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

6N1D|1|B23S|U|1357
6N1D|1|B23S|G|1358
6N1D|1|B23S|A|1359
6N1D|1|B23S|A|1360
6N1D|1|B23S|G|1361
*
6N1D|1|B23S|C|1370
6N1D|1|B23S|G|1371
6N1D|1|B23S|U|1372
6N1D|1|B23S|A|1373
6N1D|1|B23S|G|1374

Current chains

Chain B23S
23S rRNA

Nearby chains

Chain BL02
50S ribosomal protein L2
Chain BL28
50S ribosomal protein L28
Chain BL34
50S ribosomal protein L34

Coloring options:


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