IL_6N1D_286

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAG*CAGGG

Length

9 nucleotides

Bulged bases

6N1D|1|B23S|G|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_286 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.5814

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6N1D|1|B23S|C|1432
6N1D|1|B23S|U|1433
6N1D|1|B23S|A|1434
6N1D|1|B23S|G|1435
*
6N1D|1|B23S|C|1557
6N1D|1|B23S|A|1558
6N1D|1|B23S|G|1559
6N1D|1|B23S|G|1560
6N1D|1|B23S|G|1561

Current chains

Chain B23S

23S rRNA

Nearby chains