IL_6N1D_295

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_295 not in the Motif Atlas

Homologous match to IL_7RQB_066

Geometric discrepancy: 0.1127

The information below is about IL_7RQB_066

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

6N1D|1|B23S|G|1666
6N1D|1|B23S|G|1667
6N1D|1|B23S|A|1668
6N1D|1|B23S|A|1669
*
6N1D|1|B23S|U|1993
6N1D|1|B23S|C|1994

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL03

50S ribosomal protein L3

Chain BL14

50S ribosomal protein L14