IL_6N1D_302

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

6N1D|1|B23S|A|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_302 not in the Motif Atlas

Homologous match to IL_7RQB_073

Geometric discrepancy: 0.1912

The information below is about IL_7RQB_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_88739.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

6N1D|1|B23S|G|1846
6N1D|1|B23S|A|1847
6N1D|1|B23S|A|1848
6N1D|1|B23S|G|1849
*
6N1D|1|B23S|C|1893
6N1D|1|B23S|C|1894

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain B16S

Small subunit ribosomal RNA; SSU rRNA

Chain BL02

50S ribosomal protein L2

Chain BPTN

Transfer RNA; tRNA