IL_6N1D_303

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_303 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.2774

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

6N1D|1|B23S|U|1851
6N1D|1|B23S|C|1852
6N1D|1|B23S|A|1853
6N1D|1|B23S|A|1854
6N1D|1|B23S|G|1855
*
6N1D|1|B23S|C|1887
6N1D|1|B23S|G|1888
6N1D|1|B23S|A|1889
6N1D|1|B23S|A|1890
6N1D|1|B23S|G|1891

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL02

50S ribosomal protein L2

Chain BL28

50S ribosomal protein L28

Chain BPTN

Transfer RNA; tRNA