IL_6N1D_314

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_314 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.5172

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

6N1D|1|B23S|G|2110
6N1D|1|B23S|C|2111
6N1D|1|B23S|G|2112
6N1D|1|B23S|U|2113
6N1D|1|B23S|A|2114
6N1D|1|B23S|G|2115
6N1D|1|B23S|G|2116
6N1D|1|B23S|A|2117
6N1D|1|B23S|U|2118
6N1D|1|B23S|A|2119
6N1D|1|B23S|G|2120
*
6N1D|1|B23S|C|2178
6N1D|1|B23S|C|2179

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain A16S

Small subunit ribosomal RNA; SSU rRNA

Chain BL01

50S ribosomal protein L1

Chain BPTN

Transfer RNA; tRNA