IL_6N1D_317

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAG*CGGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_317 not in the Motif Atlas

Geometric match to IL_4V9F_080

Geometric discrepancy: 0.2691

The information below is about IL_4V9F_080

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

6N1D|1|B23S|C|2297
6N1D|1|B23S|A|2298
6N1D|1|B23S|G|2299
*
6N1D|1|B23S|C|2317
6N1D|1|B23S|G|2318
6N1D|1|B23S|G|2319
6N1D|1|B23S|A|2320
6N1D|1|B23S|G|2321

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain B5S

5S ribosomal RNA; 5S rRNA

Chain BL05

50S ribosomal protein L5

Chain BL27

50S ribosomal protein L27