IL_6N1D_326

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

6N1D|1|B23S|G|2576, 6N1D|1|B23S|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_326 not in the Motif Atlas

Geometric match to IL_5J7L_340

Geometric discrepancy: 0.1637

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6N1D|1|B23S|C|2510
6N1D|1|B23S|U|2511
6N1D|1|B23S|C|2512
*
6N1D|1|B23S|G|2574
6N1D|1|B23S|C|2575
6N1D|1|B23S|G|2576
6N1D|1|B23S|A|2577
6N1D|1|B23S|G|2578

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL03

50S ribosomal protein L3

Chain BL32

50S ribosomal protein L32