IL_6N1D_330

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

6N1D|1|B23S|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_330 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.1157

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6N1D|1|B23S|U|2636
6N1D|1|B23S|U|2637
6N1D|1|B23S|G|2638
6N1D|1|B23S|A|2639
6N1D|1|B23S|G|2640
*
6N1D|1|B23S|C|2774
6N1D|1|B23S|A|2775
6N1D|1|B23S|A|2776
6N1D|1|B23S|G|2777
6N1D|1|B23S|A|2778
6N1D|1|B23S|U|2779
6N1D|1|B23S|G|2780
6N1D|1|B23S|A|2781
6N1D|1|B23S|G|2782

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL03

50S ribosomal protein L3

Chain BL13

50S ribosomal protein L13