IL_6N1D_333

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

6N1D|1|B23S|U|2689

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_333 not in the Motif Atlas

Homologous match to IL_4WF9_102

Geometric discrepancy: 0.1406

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

6N1D|1|B23S|U|2687
6N1D|1|B23S|U|2688
6N1D|1|B23S|U|2689
6N1D|1|B23S|C|2690
6N1D|1|B23S|C|2691
*
6N1D|1|B23S|G|2718
6N1D|1|B23S|G|2719
6N1D|1|B23S|U|2720
6N1D|1|B23S|A|2721
6N1D|1|B23S|G|2722

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL03

50S ribosomal protein L3

Chain BL17

50S ribosomal protein L17

Chain BL19

50S ribosomal protein L19