IL_6N1D_342

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUCCC*GAACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_342 not in the Motif Atlas

Homologous match to IL_7RQB_114

Geometric discrepancy: 0.1956

The information below is about IL_7RQB_114

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.6

Basepair signature

cWW-cWS-L-tSW-L-cWW

Number of instances in this motif group

8

Unit IDs

6N1D|1|B5S|U|34
6N1D|1|B5S|U|35
6N1D|1|B5S|C|36
6N1D|1|B5S|C|37
6N1D|1|B5S|C|38
*
6N1D|1|B5S|G|44
6N1D|1|B5S|A|45
6N1D|1|B5S|A|46
6N1D|1|B5S|C|47
6N1D|1|B5S|A|48

Current chains

Chain B5S

5s rRNA

Nearby chains

Chain B23S

Large subunit ribosomal RNA; LSU rRNA

Chain BL05

50S ribosomal protein L5

Chain BL18

50S ribosomal protein L18

Chain BL31

50S ribosomal protein L31