IL_6N1D_346
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UGUAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N1D_346 not in the Motif Atlas
- Homologous match to IL_7A0S_111
- Geometric discrepancy: 0.175
- The information below is about IL_7A0S_111
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_38862.4
- Basepair signature
- cWW-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6N1D|1|A23S|U|858
6N1D|1|A23S|G|859
6N1D|1|A23S|U|860
6N1D|1|A23S|A|861
6N1D|1|A23S|G|862
*
6N1D|1|A23S|C|915
6N1D|1|A23S|G|916
6N1D|1|A23S|A|917
6N1D|1|A23S|A|918
6N1D|1|A23S|G|919
Current chains
- Chain A23S
- 23S rRNA
Nearby chains
- Chain A5S
- 5S ribosomal RNA; 5S rRNA
- Chain AL16
- 50S ribosomal protein L16
- Chain AL25
- 50S ribosomal protein L25
- Chain AL27
- 50S ribosomal protein L27
- Chain AL30
- 50S ribosomal protein L30
Coloring options: