IL_6N5T_004

3D structure

PDB id

6N5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Human pir-miRNA-378a Apical Loop Fused to the YdaO Riboswitch Scaffold

Experimental method

X-RAY DIFFRACTION

Resolution

2.79 Å

Loop

Sequence

CGCUUUUUGG*CGACAG

Length

16 nucleotides

Bulged bases

6N5T|1|A|U|42

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N5T_004 not in the Motif Atlas

Homologous match to IL_6N5P_004

Geometric discrepancy: 0.1323

The information below is about IL_6N5P_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73700.1

Basepair signature

cWW-L-R-L-cWW-L-cWW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6N5T|1|A|C|35
6N5T|1|A|G|36
6N5T|1|A|C|37
6N5T|1|A|U|38
6N5T|1|A|U|39
6N5T|1|A|U|40
6N5T|1|A|U|41
6N5T|1|A|U|42
6N5T|1|A|G|43
6N5T|1|A|G|44
*
6N5T|1|A|C|93
6N5T|1|A|G|94
6N5T|1|A|A|95
6N5T|1|A|C|96
6N5T|1|A|A|97
6N5T|1|A|G|98

Current chains

Chain A

RNA (126-MER)

Nearby chains