IL_6N8J_002
3D structure
- PDB id
- 6N8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CC*GCG
- Length
- 5 nucleotides
- Bulged bases
- 6N8J|1|3|C|151
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8J_002 not in the Motif Atlas
- Homologous match to IL_5TBW_002
- Geometric discrepancy: 0.1415
- The information below is about IL_5TBW_002
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_61258.13
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 40
Unit IDs
6N8J|1|1|C|7
6N8J|1|1|C|8
*
6N8J|1|3|G|150
6N8J|1|3|C|151
6N8J|1|3|G|152
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
- Chain 3
- 5.8S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L8-A
- Chain N
- 60S ribosomal protein L15-A
- Chain X
- 60S ribosomal protein L25
Coloring options: