IL_6N8J_022
3D structure
- PDB id
- 6N8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGGG*UGCAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8J_022 not in the Motif Atlas
- Homologous match to IL_5TBW_023
- Geometric discrepancy: 0.1245
- The information below is about IL_5TBW_023
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_07235.3
- Basepair signature
- cWW-tSH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
6N8J|1|1|G|725
6N8J|1|1|G|726
6N8J|1|1|G|727
6N8J|1|1|G|728
*
6N8J|1|1|U|741
6N8J|1|1|G|742
6N8J|1|1|C|743
6N8J|1|1|A|744
6N8J|1|1|C|745
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain Q
- 60S ribosomal protein L18-A
- Chain o
- 60S ribosomal protein L29
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