IL_6N8J_091
3D structure
- PDB id
- 6N8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUC*GUGAG
- Length
- 8 nucleotides
- Bulged bases
- 6N8J|1|1|G|2945, 6N8J|1|1|A|2946
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8J_091 not in the Motif Atlas
- Geometric match to IL_5TBW_108
- Geometric discrepancy: 0.1535
- The information below is about IL_5TBW_108
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_54650.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6N8J|1|1|C|2879
6N8J|1|1|U|2880
6N8J|1|1|C|2881
*
6N8J|1|1|G|2943
6N8J|1|1|U|2944
6N8J|1|1|G|2945
6N8J|1|1|A|2946
6N8J|1|1|G|2947
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain V
- 60S ribosomal protein L23-A
- Chain b
- Nucleolar GTP-binding protein 1
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