3D structure

PDB id
6N8J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CACAA*UUGCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N8J_103 not in the Motif Atlas
Homologous match to IL_5TBW_121
Geometric discrepancy: 0.3196
The information below is about IL_5TBW_121
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_05145.3
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
13

Unit IDs

6N8J|1|1|C|3164
6N8J|1|1|A|3165
6N8J|1|1|C|3166
6N8J|1|1|A|3167
6N8J|1|1|A|3168
*
6N8J|1|1|U|3282
6N8J|1|1|U|3283
6N8J|1|1|G|3284
6N8J|1|1|C|3285
6N8J|1|1|G|3286

Current chains

Chain 1
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain P
60S ribosomal protein L17-A
Chain f
60S ribosomal protein L33-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1383 s
Application loaded.