3D structure

PDB id
6N8J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UACGAAUAAG*CGCUGAA
Length
17 nucleotides
Bulged bases
6N8J|1|1|A|3180, 6N8J|1|1|A|3186, 6N8J|1|1|C|3206, 6N8J|1|1|U|3207, 6N8J|1|1|A|3209
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N8J_106 not in the Motif Atlas
Geometric match to IL_5TBW_124
Geometric discrepancy: 0.1087
The information below is about IL_5TBW_124
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_15174.1
Basepair signature
cWW-L-R-L-R-L-cWW-cSS-cWW-L
Number of instances in this motif group
2

Unit IDs

6N8J|1|1|U|3179
6N8J|1|1|A|3180
6N8J|1|1|C|3181
6N8J|1|1|G|3182
6N8J|1|1|A|3183
6N8J|1|1|A|3184
6N8J|1|1|U|3185
6N8J|1|1|A|3186
6N8J|1|1|A|3187
6N8J|1|1|G|3188
*
6N8J|1|1|C|3204
6N8J|1|1|G|3205
6N8J|1|1|C|3206
6N8J|1|1|U|3207
6N8J|1|1|G|3208
6N8J|1|1|A|3209
6N8J|1|1|A|3210

Current chains

Chain 1
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain E
60S ribosomal protein L6-A
Chain H
60S ribosomal protein L9-A
Chain M
60S ribosomal protein L14-A
Chain O
60S ribosomal protein L16-A
Chain S
60S ribosomal protein L20-A
Chain f
60S ribosomal protein L33-A

Coloring options:


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