IL_6N8J_121

3D structure

PDB id

6N8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACCGAGUAG*CGAAACU

Length

16 nucleotides

Bulged bases

6N8J|1|2|C|73

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8J_121 not in the Motif Atlas

Homologous match to IL_5TBW_377

Geometric discrepancy: 0.1798

The information below is about IL_5TBW_377

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6N8J|1|2|A|72
6N8J|1|2|C|73
6N8J|1|2|C|74
6N8J|1|2|G|75
6N8J|1|2|A|76
6N8J|1|2|G|77
6N8J|1|2|U|78
6N8J|1|2|A|79
6N8J|1|2|G|80
*
6N8J|1|2|C|100
6N8J|1|2|G|101
6N8J|1|2|A|102
6N8J|1|2|A|103
6N8J|1|2|A|104
6N8J|1|2|C|105
6N8J|1|2|U|106

Current chains

Chain 2

5S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain F

60S ribosomal protein L7-A

Chain S

60S ribosomal protein L20-A