IL_6N8J_123
3D structure
- PDB id
- 6N8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8J_123 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.0884
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
6N8J|1|3|A|44
6N8J|1|3|C|45
6N8J|1|3|G|46
6N8J|1|3|C|47
6N8J|1|3|A|48
6N8J|1|3|G|49
6N8J|1|3|C|50
6N8J|1|3|G|51
6N8J|1|3|A|52
6N8J|1|3|A|53
6N8J|1|3|A|54
6N8J|1|3|U|55
6N8J|1|3|G|56
6N8J|1|3|C|57
6N8J|1|3|G|58
6N8J|1|3|A|59
6N8J|1|3|U|60
6N8J|1|3|A|61
6N8J|1|3|C|62
6N8J|1|3|G|63
6N8J|1|3|U|64
*
6N8J|1|3|A|96
6N8J|1|3|A|97
6N8J|1|3|U|98
6N8J|1|3|C|99
6N8J|1|3|U|100
Current chains
- Chain 3
- 5.8S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- 60S ribosomal protein L25
- Chain b
- Nucleolar GTP-binding protein 1
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
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