IL_6N8J_127

3D structure

PDB id

6N8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUG*CAGC

Length

7 nucleotides

Bulged bases

6N8J|1|1|A|578

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8J_127 not in the Motif Atlas

Geometric match to IL_8E4X_001

Geometric discrepancy: 0.2232

The information below is about IL_8E4X_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

6N8J|1|1|G|511
6N8J|1|1|U|512
6N8J|1|1|G|513
*
6N8J|1|1|C|577
6N8J|1|1|A|578
6N8J|1|1|G|579
6N8J|1|1|C|580

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain F

60S ribosomal protein L7-A