IL_6N8J_141

3D structure

PDB id

6N8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

6N8J|1|1|U|1820, 6N8J|1|1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8J_141 not in the Motif Atlas

Homologous match to IL_8P9A_293

Geometric discrepancy: 0.2929

The information below is about IL_8P9A_293

Detailed Annotation

Major groove platform related

Broad Annotation

Major groove platform related

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

6N8J|1|1|G|1623
6N8J|1|1|G|1624
*
6N8J|1|1|U|1819
6N8J|1|1|U|1820
6N8J|1|1|U|1821
6N8J|1|1|C|1822

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain g

60S ribosomal protein L34-A

Chain k

60S ribosomal protein L38