IL_6N8K_150

3D structure

PDB id

6N8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CACAC*GCGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8K_150 not in the Motif Atlas

Homologous match to IL_8P9A_349

Geometric discrepancy: 0.2777

The information below is about IL_8P9A_349

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

6N8K|1|1|C|3162
6N8K|1|1|A|3163
6N8K|1|1|C|3164
6N8K|1|1|A|3165
6N8K|1|1|C|3166
*
6N8K|1|1|G|3284
6N8K|1|1|C|3285
6N8K|1|1|G|3286
6N8K|1|1|U|3287
6N8K|1|1|G|3288

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains