IL_6N8K_157
3D structure
- PDB id
- 6N8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGGC*GAAUC
- Length
- 10 nucleotides
- Bulged bases
- 6N8K|1|1|G|1236
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8K_157 not in the Motif Atlas
- Homologous match to IL_8P9A_283
- Geometric discrepancy: 0.4921
- The information below is about IL_8P9A_283
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_16218.2
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
6N8K|1|1|G|1234
6N8K|1|1|U|1235
6N8K|1|1|G|1236
6N8K|1|1|G|1237
6N8K|1|1|C|1238
*
6N8K|1|1|G|1250
6N8K|1|1|A|1251
6N8K|1|1|A|1252
6N8K|1|1|U|1253
6N8K|1|1|C|1254
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain W
- Ribosome assembly factor MRT4
Coloring options: