IL_6N8L_061
3D structure
- PDB id
- 6N8L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGAAUG*CAGGAA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8L_061 not in the Motif Atlas
- Geometric match to IL_7A0S_018
- Geometric discrepancy: 0.322
- The information below is about IL_7A0S_018
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_57885.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
6N8L|1|1|U|1645
6N8L|1|1|G|1646
6N8L|1|1|A|1647
6N8L|1|1|A|1648
6N8L|1|1|U|1649
6N8L|1|1|G|1650
*
6N8L|1|1|C|1805
6N8L|1|1|A|1806
6N8L|1|1|G|1807
6N8L|1|1|G|1808
6N8L|1|1|A|1809
6N8L|1|1|A|1810
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain Z
- 60S ribosomal protein L27-A
- Chain g
- 60S ribosomal protein L34-A
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