IL_6N8L_181

3D structure

PDB id

6N8L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

6N8L|1|1|U|3354, 6N8L|1|1|U|3355

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8L_181 not in the Motif Atlas

Homologous match to IL_8CRE_142

Geometric discrepancy: 0.2272

The information below is about IL_8CRE_142

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

6N8L|1|1|C|3349
6N8L|1|1|C|3350
*
6N8L|1|1|G|3353
6N8L|1|1|U|3354
6N8L|1|1|U|3355
6N8L|1|1|G|3356

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains