IL_6N8M_019

3D structure

PDB id

6N8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

6N8M|1|A|U|534, 6N8M|1|A|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8M_019 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.1221

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6N8M|1|A|G|531
6N8M|1|A|A|532
6N8M|1|A|A|533
6N8M|1|A|U|534
6N8M|1|A|G|535
6N8M|1|A|U|536
6N8M|1|A|A|537
6N8M|1|A|G|538
*
6N8M|1|A|U|553
6N8M|1|A|A|554
6N8M|1|A|U|555
6N8M|1|A|U|556
6N8M|1|A|A|557
6N8M|1|A|U|558
6N8M|1|A|A|559
6N8M|1|A|G|560
6N8M|1|A|C|561

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain O

60S ribosomal protein L14-A

Chain f

60S ribosomal protein L20-A