IL_6N8M_024
3D structure
- PDB id
- 6N8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAUC*GAUUU
- Length
- 9 nucleotides
- Bulged bases
- 6N8M|1|A|U|776
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8M_024 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.2448
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6N8M|1|A|G|754
6N8M|1|A|A|755
6N8M|1|A|U|756
6N8M|1|A|C|757
*
6N8M|1|A|G|774
6N8M|1|A|A|775
6N8M|1|A|U|776
6N8M|1|A|U|777
6N8M|1|A|U|778
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain Q
- 60S ribosomal protein L42-A
- Chain d
- 60S ribosomal protein L18-A
- Chain n
- 60S ribosomal protein L28
- Chain o
- 60S ribosomal protein L29
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