IL_6N8M_048
3D structure
- PDB id
- 6N8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UCUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 6N8M|1|A|A|1221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8M_048 not in the Motif Atlas
- Homologous match to IL_8C3A_057
- Geometric discrepancy: 0.1874
- The information below is about IL_8C3A_057
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
6N8M|1|A|U|1218
6N8M|1|A|C|1219
6N8M|1|A|U|1220
6N8M|1|A|A|1221
6N8M|1|A|G|1222
6N8M|1|A|A|1223
6N8M|1|A|C|1224
6N8M|1|A|A|1225
6N8M|1|A|G|1226
*
6N8M|1|A|C|1283
6N8M|1|A|C|1284
6N8M|1|A|G|1285
6N8M|1|A|A|1286
6N8M|1|A|A|1287
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain f
- 60S ribosomal protein L20-A
- Chain z
- Ubiquitin-60S ribosomal protein L40
Coloring options: