IL_6N8N_058

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

6N8N|1|A|U|1629, 6N8N|1|A|U|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8N_058 not in the Motif Atlas

Homologous match to IL_8C3A_072

Geometric discrepancy: 0.2153

The information below is about IL_8C3A_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6N8N|1|A|U|1627
6N8N|1|A|C|1628
6N8N|1|A|U|1629
6N8N|1|A|U|1630
6N8N|1|A|C|1631
*
6N8N|1|A|G|1811
6N8N|1|A|G|1812
6N8N|1|A|A|1813
6N8N|1|A|A|1814
6N8N|1|A|U|1815
6N8N|1|A|A|1816

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain m

60S ribosomal protein L27-A