IL_6N8N_109
3D structure
- PDB id
- 6N8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AUAAUU*ACCAU
- Length
- 11 nucleotides
- Bulged bases
- 6N8N|1|A|C|3092
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8N_109 not in the Motif Atlas
- Geometric match to IL_5TBW_062
- Geometric discrepancy: 0.3591
- The information below is about IL_5TBW_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_51005.1
- Basepair signature
- cWW-L-R-tWH-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
6N8N|1|A|A|3046
6N8N|1|A|U|3047
6N8N|1|A|A|3048
6N8N|1|A|A|3049
6N8N|1|A|U|3050
6N8N|1|A|U|3051
*
6N8N|1|A|A|3091
6N8N|1|A|C|3092
6N8N|1|A|C|3093
6N8N|1|A|A|3094
6N8N|1|A|U|3095
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain E
- 60S ribosomal protein L3
- Chain i
- 60S ribosomal protein L23-A
- Chain j
- 60S ribosomal protein L24-A
Coloring options: