IL_6N8N_124

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

6N8N|1|A|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N8N_124 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.1686

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6N8N|1|A|G|3328
6N8N|1|A|U|3329
6N8N|1|A|A|3330
*
6N8N|1|A|U|3373
6N8N|1|A|U|3374
6N8N|1|A|A|3375
6N8N|1|A|A|3376
6N8N|1|A|G|3377
6N8N|1|A|C|3378

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain q

60S ribosomal protein L31-A