IL_6N8N_136
3D structure
- PDB id
- 6N8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UAAU*AUCGA
- Length
- 9 nucleotides
- Bulged bases
- 6N8N|1|C|G|95
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8N_136 not in the Motif Atlas
- Geometric match to IL_1GID_008
- Geometric discrepancy: 0.3917
- The information below is about IL_1GID_008
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 36
Unit IDs
6N8N|1|C|U|64
6N8N|1|C|A|65
6N8N|1|C|A|66
6N8N|1|C|U|67
*
6N8N|1|C|A|92
6N8N|1|C|U|93
6N8N|1|C|C|94
6N8N|1|C|G|95
6N8N|1|C|A|96
Current chains
- Chain C
- 5.8S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 60S ribosomal protein L26-A
- Chain u
- 60S ribosomal protein L35-A
- Chain w
- 60S ribosomal protein L37-A
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